PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66083.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 181aa    MW: 20713.2 Da    PI: 8.4669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66083.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62e-52161581128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                   +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++               + +++++ewyfFs +d+ky++g+r+nrat++g+
  MLOC_66083.3  16 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcgggrggrgarqvpEDDQTSSEWYFFSFKDRKYPSGTRTNRATAAGF 111
                   69****************************.99**************955899999988875442222445************************** PP

           NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   Wkatg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  MLOC_66083.3 112 WKATGRDKPVTSSrSRGVIGMRKTLVFYRGRAPSGQKTDWIIHEYRL 158
                   ***********9856678***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-528167IPR003441NAC domain
PROSITE profilePS5100551.71716181IPR003441NAC domain
PfamPF023651.2E-2717158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MLAMEQQHHE QEESCVPPGF RFHPTEEELV GYYLARKVAA QKIDLDIIQE VDLYRIEPWD  60
LQERCGGGRG GRGARQVPED DQTSSEWYFF SFKDRKYPSG TRTNRATAAG FWKATGRDKP  120
VTSSRSRGVI GMRKTLVFYR GRAPSGQKTD WIIHEYRLQT NEHAPTQVIN SSLLHPPSPS  180
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-5121581140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677890.0AK367789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650248.12e-87PREDICTED: NAC domain-containing protein 105
SwissprotO655083e-72NAC76_ARATH; NAC domain-containing protein 76
TrEMBLM0Y6951e-135M0Y695_HORVD; Uncharacterized protein
STRINGMLOC_66083.11e-122(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.13e-71NAC domain containing protein 76